Function reference • lukesRlib

PheWAS

Get associations between a number of exposures and outcomes.

get_assoc(): Get tidy model output of exposure(s) on outcome(s)

Get summary statistics

‘Tidy’ model output with confidence intervals and other useful information.

tidy_ci(): Get tidy model output with fast CIs

Working with test statistics

Derived p-value, standard error (etc.) from other test statistics.

get_p(): Get p-value from Z-statistic

get_p_extreme(): Get extreme p-value

get_p_neglog10(): Get -log10 p-value (using Z only)

get_p_neglog10_n(): Get -log10 p-value (using Z & N)

get_se(): Get Standard Error from Confidence Intervals

get_z(): Get Z-statistic from p-value

Transform data

Manipulate variables.

carrec(): Recode a Variable

inv_norm(): Inverse normalize a variable

z_trans(): Z-transform a variable

For working with plots.

annotate_textp(): Annotate a ggplot2 plot with text

theme_minimal_modified(): Modified theme_minimal for ggplots

Example data

Small dataset used in examples.

example_data: The Framingham Heart Study